PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g001070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 627aa    MW: 68952 Da    PI: 5.4712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g001070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12454499454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Sopen08g001070.1 454 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 499
                       799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5560248IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-14453504No hitNo description
SuperFamilySSF474594.45E-18453523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-18454520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-10454499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MTDYRLWSNS NTTNTCDDNM MMDSFLSSDP SSFWPASTPN RPTPVNGVGE TMPFFNQESL  60
QQRLQALIDG ARESWAYAIF WQSSVVDFAS QTVLGWGDGY YKGEEDKNKR RGSSSSAANF  120
VAEQEHRKKV LRELNSLISG VQASAGNGTD DAVDEEVTDT EWFFLISMTQ SFVNGNGLPG  180
LAMYSSSPIW VTGTEKLAAS QCERARQAQG FGLQTIVCIP SANGVVELGS TELIFQSSDL  240
MNKVKYLFNF NIDMGSVTGS GSGSGSCAVH PEPDPSALWL TDPSSSVVEP KDSLINSSSR  300
DVQLVYGNEN SENQQQQHCQ GFFTKELNFS GYGFDGSSNR NKNGISCKPE SREILNFGDS  360
SKRFSGQSQL GPGPGLMEEN KNKKRSLGSR GNNEEGMLSF VSGVILPTST MGKSGDSDHS  420
DLEASVVKEA VVEPEKKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNV  480
SKMDKASLLG DAIAYINELK SKVQNSDLDK EELRSQIECL RKELTNKGSS NYSASPPLSQ  540
DVKIVDMDID VKVIGWDAMI RIQCSKKNHP AARLMAALKD LDLDVHHASV SVVNDLMIQQ  600
ATVKMGSRLY AQEQLRIALT SKIAESR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A6e-69532512195Transcription factor MYC3
4rs9_A6e-69532512195Transcription factor MYC3
4rqw_B6e-69532512195Transcription factor MYC3
4rqw_A6e-69532512195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435443KKPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085548.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A060KY900.0A0A060KY90_SOLLC; MYC1
STRINGPGSC0003DMT4000029630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-161bHLH family protein